Experience

 
 
 
 
 
January 2018 – Present
Bethesda, MD

Senior Associate Scientist

National Cancer Institute, National Institutes of Health

 
 
 
 
 
January 2008 – December 2017
Bethesda, MD

Staff Scientist

National Cancer Institute, National Institutes of Health

 
 
 
 
 
July 2002 – December 2007
Bethesda, MD

Clinical Fellow, Pediatric Hematology/Oncology

Johns Hopkins University & National Human Genome Research Institute, NIH

 
 
 
 
 
July 1999 – June 2002
Seattle, WA

Resident, Pediatrics

Childrens Hospital and Regional Medical Center

Recent Publications

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The importance of bioinformatics, computational biology, and data science in biomedical research continues to grow, driving a need for …

Summary Humans with autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED), a T cell-driven autoimmune disease caused …

Precision genomic oncology–applying high throughput sequencing (HTS) at the point-of-care to inform clinical decisions–is a …

Molecular interrogation of a biological sample through DNA sequencing, RNA and microRNA profiling, proteomics and other assays, has the …

Gastric adenocarcinoma and proximal polyposis of the stomach (GAPPS) is an autosomal-dominant cancer-predisposition syndrome with a …

Recent & Upcoming Talks

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In this talk, I give a high-level overview of the Bioconductor project.

This workshop introduces ATAC-Seq, quality control approaches, isolating nucleosome compartments, and profile plots and heatmaps.

In a series of talks and exercises, I cover introduction to R, Bioconductor, genomic ranges, container classes, annotation of genes and …

The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using large-scale public data resources …

Lightweight tools, software, and publication processes that tie together data resources, analysis tools, documentation can powerful …

Recent Posts

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Availability: This ipython notebook is available at https://github.com/seandavi/omicidx_examples. OmicIDX is a project to democratize …

The Bioconductor package ecosystem continues to grow at an exponential rate (check it–I am right). We have recently completed the …

I will come back to the rationale for this post at a later date, but consider this another notebook type of post, serving as part of my …

In this post, I will quickly build a docker image containing the sra-toolkit and a key for dbGaP downloads. Because the key file is …

I use emacs for nearly all my editing and interactive analysis. As one typically does, more than one project is the norm, not the …

Contact

  • seandavi_2
  • Bldg 37, Room 6138, 37 Convent Drive, Bethesda, MD 20892
  • Email me for appointment