Experience

 
 
 
 
 
January 2018 – Present
Bethesda, MD

Senior Associate Scientist

National Cancer Institute, National Institutes of Health

 
 
 
 
 
January 2008 – December 2017
Bethesda, MD

Staff Scientist

National Cancer Institute, National Institutes of Health

 
 
 
 
 
July 2002 – December 2007
Bethesda, MD

Clinical Fellow, Pediatric Hematology/Oncology

Johns Hopkins University & National Human Genome Research Institute, NIH

 
 
 
 
 
July 1999 – June 2002
Seattle, WA

Resident, Pediatrics

Childrens Hospital and Regional Medical Center

Recent Publications

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The importance of bioinformatics, computational biology, and data science in biomedical research continues to grow, driving a need for …

Summary Humans with autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED), a T cell-driven autoimmune disease caused …

Precision genomic oncology–applying high throughput sequencing (HTS) at the point-of-care to inform clinical decisions–is a …

Molecular interrogation of a biological sample through DNA sequencing, RNA and microRNA profiling, proteomics and other assays, has the …

Gastric adenocarcinoma and proximal polyposis of the stomach (GAPPS) is an autosomal-dominant cancer-predisposition syndrome with a …

Recent & Upcoming Talks

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This talk compares and contrasts four formats for data science and informatics education. The discussion will highlight some approaches …

This talk presents a very quick overview of the Bioconductor project, focusing on its values of reproducibility, reuse, and openness.

In this talk, I motivate the need for cloud-based cancer data resourdces. I provide an overview of the NCI Genomic Data Commons and how …

I demonstrate the use of the SevenBridges Cancer Genomics Cloud Resource to run RNA-seq and DNAse-seq workflows on cloud resources.

Recent Posts

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I use emacs for nearly all my editing and interactive analysis. As one typically does, more than one project is the norm, not the …

One of the main features of the annual Bioconductor Conference is the proportion of time spent working with code in the form of …

This short post introducds the gdc_clinical() function recently added to the GenomicDataCommons package. The rich data model at the NCI …

Apache Spark in a few words Apache Spark is a software and data science platform that is purpose-built for large- to massive-scale data …

The NCI Genomic Data Commons (GDC) now contains the authoritative source of data from The Cancer Genome Atlas (TCGA) as well as several …

Contact

  • seandavi_2
  • Bldg 37, Room 6138, 37 Convent Drive, Bethesda, MD 20892
  • Email me for appointment