Posts

Availability: This ipython notebook is available at https://github.com/seandavi/omicidx_examples. OmicIDX is a project to democratize …

The Bioconductor package ecosystem continues to grow at an exponential rate (check it–I am right). We have recently completed the …

I will come back to the rationale for this post at a later date, but consider this another notebook type of post, serving as part of my …

In this post, I will quickly build a docker image containing the sra-toolkit and a key for dbGaP downloads. Because the key file is …

I use emacs for nearly all my editing and interactive analysis. As one typically does, more than one project is the norm, not the …

One of the main features of the annual Bioconductor Conference is the proportion of time spent working with code in the form of …

This short post introducds the gdc_clinical() function recently added to the GenomicDataCommons package. The rich data model at the NCI …

Apache Spark in a few words Apache Spark is a software and data science platform that is purpose-built for large- to massive-scale data …

The NCI Genomic Data Commons (GDC) now contains the authoritative source of data from The Cancer Genome Atlas (TCGA) as well as several …