Posts

In this post, I will quickly build a docker image containing the sra-toolkit and a key for dbGaP downloads. Because the key file is …

I use emacs for nearly all my editing and interactive analysis. As one typically does, more than one project is the norm, not the …

One of the main features of the annual Bioconductor Conference is the proportion of time spent working with code in the form of …

This short post introducds the gdc_clinical() function recently added to the GenomicDataCommons package. The rich data model at the NCI …

Apache Spark in a few words Apache Spark is a software and data science platform that is purpose-built for large- to massive-scale data …

The NCI Genomic Data Commons (GDC) now contains the authoritative source of data from The Cancer Genome Atlas (TCGA) as well as several …

One of the features of the NCI Genomic Data Commons is that everything has a unique identifier in the form of a UUID. However, because …

I recently got burned by inadvertently committing secrets to a github repository. This post just outlines one potential solution to …