Recent & Upcoming Talks

2019

This workshop introduces ATAC-Seq, quality control approaches, isolating nucleosome compartments, and profile plots and heatmaps.

In a series of talks and exercises, I cover introduction to R, Bioconductor, genomic ranges, container classes, annotation of genes and …

The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using large-scale public data resources …

Lightweight tools, software, and publication processes that tie together data resources, analysis tools, documentation can powerful …

2018

This talk compares and contrasts four formats for data science and informatics education. The discussion will highlight some approaches …

This talk presents a very quick overview of the Bioconductor project, focusing on its values of reproducibility, reuse, and openness.

In this talk, I motivate the need for cloud-based cancer data resourdces. I provide an overview of the NCI Genomic Data Commons and how …

I demonstrate the use of the SevenBridges Cancer Genomics Cloud Resource to run RNA-seq and DNAse-seq workflows on cloud resources.

In this guided workshop, we will use the SevenBridges Cancer Genomics Cloud Resource to run simple RNA-seq workflow on cloud resources.

More than 150 researchers, engineers and data enthusiasts gathered at Salesforce in San Francisco for an intense weekend of exploration …

The National Cancer Institute has established the Genomic Data Commons (GDC) to provide access to large-scale, publicly available …

2017

Progress in biotechnology is continually leading to new types of data, resulting in data sets that are rapidly increasing in volume, …

The USDA and the Agricultural Research Service (ARS) hosted a workshop to develop their ten year plan for genomics and phenotype. These …

This is a very basic introduction to good vs bad graphics, built around data and material from Karl Broman and Rafa Irizarry. Concepts …

I present a high-level introduction to machine learning in Biomedicine with a few examples from the literature. The talk is accompanied …