Skip to contents
-
GDS-class
- Class "GDS"
-
GEOData-accessors dataTable Accession Columns GPLList GSMList Meta Table
- Generic functions for GEOquery
-
GEOData-class Accession,GEOData-method Columns,GEOData-method Meta,GEOData-method Table,GEOData-method dataTable,GEOData-method show,GEOData-method
- Class "GEOData"
-
GEODataTable-class Accession,GEODataTable-method Columns,GEODataTable-method Meta,GEODataTable-method Table,GEODataTable-method dataTable,GEODataTable-method show,GEODataTable-method
- Class "GEODataTable"
-
GPL-class GPL GPL,GDS-method
- Class "GPL"
-
GSE-class GPLList,GSE-method GSMList,GSE-method Meta,GSE-method
- Class "GSE"
-
GSM-class
- Class "GSM"
-
coercion GDS2MA GDS2eSet
- Convert a GDS data structure to a BioConductor data structure
-
getDirListing()
- get a directory listing from NCBI GEO
-
getGEO()
- Get a GEO object from NCBI or file
-
getGEOSuppFiles()
- Get Supplemental Files from GEO
-
getGEOfile()
- Download a file from GEO soft file to the local machine
-
getGSEDataTables()
- Get GSE data tables from GEO into R data structures.
-
gunzip()
- Gunzip a file
-
parseGEO()
- Parse GEO text
-
searchGEO()
- Search GEO database