Coerce a GEOquery ExpressionSet to a SummarizedExperiment — as_SummarizedExperiment • GEOquery

A thin wrapper around SummarizedExperiment::makeSummarizedExperimentFromExpressionSet() used by getGEO(..., returnType = "SummarizedExperiment"), and available directly so existing ExpressionSet results can be modernized without re-downloading.

Usage

as_SummarizedExperiment(eset)

Arguments

eset: An ExpressionSet, e.g. an element returned by getGEO() for a GSE Series Matrix file.

Value

A SummarizedExperiment.

Examples

if (FALSE) { # \dontrun{
  gse <- getGEO("GSE2553")[[1]]
  se <- as_SummarizedExperiment(gse)
} # }