Package index • HTAN

Connect to a snapshot

Open, inspect and close the DuckDB connection over a release.

htan_con(): Connect to an HTAN metadata snapshot
htan_disconnect(): Close cached HTAN connections
htan_snapshot_info(): Snapshot metadata recorded in a connection

Query metadata

Lazy dbplyr tables over the snapshot.

htan_tables() htan_tbl() htan_columns(): List and open HTAN snapshot tables
htan_files(): Find HTAN files
htan_lineage(): Trace the provenance of HTAN files

Download and read files

htan_download(): Download HTAN files
read_htan(): Read an HTAN file into a Bioconductor object
htan_experiment(): Assemble HTAN data into a MultiAssayExperiment

Package

HTAN HTAN-package: HTAN: query and retrieve Human Tumor Atlas Network open-access data