Get one or more experiments (GSE, SRP, etc) from RefineBio

This is the main function for interacting with RefineBio. It will download, extract, and load the data from RefineBio for the given experiment(s).

Usage

rb_get_experiment(experiment)

Arguments

experiment: The experiment ID or rb_experiment object
base_path: The path to the directory where the dataset will be downloaded and extracted.
cache_result: If TRUE, cache the result in the base_path.
overwrite: If TRUE, overwrite the cached result.

Value

A list of SummarizedExperiments representing the experiments in the RefineBio downloaded dataset.

Author

Sean Davis <seandavi.gmail.com>

Examples

if (FALSE) {
# Get a single experiment
expt <- rb_get_experiment("GSE1133")

# Get multiple experiments
expts <- rb_get_experiment(c("GSE1133", "GSE11331"))
}