Function reference • refinebioc

All functions

dataset_page_browser(): Open a webpage for the given dataset

dataset_sharing_link(): Get a sharing link for the given dataset

datastore_datasets(): List cached datasets'

datastore_example_path(): An example datastore

datastore_get_path(): Local datastore path settings

datastore_set_path(): Set the path to the refine.bio datastore

.rb_get_email_address(): internal function to get the email address for the current session

.refinebio_base: refinebio url

experiment_listing(): Complete list of all experiments in refine.bio

extract_local_dataset(): load a list of SummarizedExperiments from an extracted RefineBio download

get_absolute_path(): Get absolute path to a file or directory

rb_compendia_list(): All available compendia in refine.bio

rb_dataset_download(): Download an available dataset from refine.bio

rb_dataset_extract(): Extract a downloaded dataset zipfile

rb_dataset_load(): Load a dataset from a refinebio download

rb_dataset_update_state(): Get the state of a dataset

rb_email_address(): get the email address for the current session

rb_get_experiment(): Get one or more experiments (GSE, SRP, etc) from RefineBio

rb_get_token(): Create or get an active API token for use in downloading from the API

rb_institution_list(): All available institutions in refine.bio

rb_organism_list(): All available organisms in refine.bio

rb_platform_list(): All available platforms in refine.bio

rb_process_and_load(): Process and load a dataset

rb_set_email_address(): set the email address for the current session

rb_wait_for_dataset(): Wait for a dataset to become available