Package index
-
dataset_page_browser()
- Open a webpage for the given dataset
-
dataset_sharing_link()
- Get a sharing link for the given dataset
-
datastore_datasets()
- List cached datasets'
-
datastore_example_path()
- An example datastore
-
datastore_get_path()
- Local datastore path settings
-
datastore_set_path()
- Set the path to the refine.bio datastore
-
.rb_get_email_address()
- internal function to get the email address for the current session
-
.refinebio_base
- refinebio url
-
download_dataset()
- Download an available dataset from refine.bio
-
extract_dataset()
- Extract a downloaded dataset zipfile
-
extract_local_dataset()
- load a list of
SummarizedExperiment
s from an extracted RefineBio download
-
get_absolute_path()
- Get absolute path to a file or directory
-
get_compendia_catalog()
- All available compendia in refine.bio
-
get_experiment_catalog()
- Complete list of all experiments in refine.bio
-
get_refinebio()
- Get one or more experiments (GSE, SRP, etc) from RefineBio
-
load_dataset()
- Load a dataset from a refinebio download
-
process_and_load_dataset()
- Process and load a dataset
-
rb_dataset_update_state()
- Get the state of a dataset
-
rb_email_address()
- get the email address for the current session
-
rb_get_token()
- Create or get an active API token for use in downloading from the API
-
rb_set_email_address()
- set the email address for the current session
-
wait_for_dataset()
- Wait for a dataset to become available