cell_line_ancestry.Rd
Data are stored at extdata/cancer-cell-lines-ancestry.csv.gz They were accessed on November 15, 2021.
cell_line_ancestry()
Dutil J, Chen Z, Monteiro AN, Teer JK, Eschrich SA. An Interactive Resource to Probe Genetic Diversity and Estimated Ancestry in Cancer Cell Lines. Cancer Res. 2019 Apr 1;79(7):1263-1273. doi: 10.1158/0008-5472.CAN-18-2747. Epub 2019 Mar 20. PMID: 30894373; PMCID: PMC6445675.
Other Data resources:
cdc_places()
,
cdc_social_vulnerability_index()
,
census_tract_zip_crosswalk()
,
rural_zips()
,
zipcode_shapes()
#> id aliases cvcl ethnicity tissue histology #> 1: 8-MG-BA 8MGBA _1052 African American CNS Glioma #> 2: 22Rv1 22RV1 _1045 Prostate Carcinoma #> 3: 42-MG-BA 42MGBA _1798 CNS Glioma #> 4: 59M _2291 Ovary Carcinoma #> 5: 143B _2270 Caucasian Bone Osteosarcoma #> 6: 201T _X481 Lung Carcinoma #> subhistology age source ccle_membership ccle_membership eur-south #> 1: Astrocytoma Grade IV 54 Primary Y 0.331867 #> 2: Adenocarcinoma NA Primary Y 0.306245 #> 3: Astrocytoma Grade IV 63 Y 0.318954 #> 4: 65 Y 0.339103 #> 5: 13 Y 0.589814 #> 6: Adenocarcinoma NA Primary 0.055498 #> native american e.asian-south e.asian-north s.asian eur-north african #> 1: 0.000957 0.000010 0.025278 0.022865 0.619013 0.000010 #> 2: 0.002324 0.000010 0.005170 0.002725 0.674582 0.008944 #> 3: 0.000010 0.000010 0.048757 0.000010 0.632205 0.000054 #> 4: 0.000010 0.000010 0.041761 0.000010 0.587073 0.032033 #> 5: 0.000010 0.040158 0.000010 0.369989 0.000010 0.000010 #> 6: 0.000010 0.000010 0.025811 0.000010 0.030603 0.888057 #> cvcl_url #> 1: https://web.expasy.org/cellosaurus/CVCL_1052 #> 2: https://web.expasy.org/cellosaurus/CVCL_1045 #> 3: https://web.expasy.org/cellosaurus/CVCL_1798 #> 4: https://web.expasy.org/cellosaurus/CVCL_2291 #> 5: https://web.expasy.org/cellosaurus/CVCL_2270 #> 6: https://web.expasy.org/cellosaurus/CVCL_X481#> #> Metastasis Metastasis Primary Recurrent #> 672 186 13 519 3#> #> Y #> 357 1036#> #> African African American African, Black #> 641 9 1 5 #> American American Indian Asian Black #> 1 1 51 25 #> Black, African Caucasian Caucasian, European Caucasian, White #> 2 415 1 25 #> Chinese European European, French Hispanic #> 2 1 1 2 #> Indian Japanese Korean, Asian North African #> 1 190 7 1 #> Taiwanese, Asian Turkish White #> 1 1 9