Getting help

Questions about using the package (“how do I find all Level 4 scRNA-seq files for one atlas?”) are best asked on the Bioconductor support site with the tag htan. Answers there are searchable and reach a wider audience than this repository.

Questions about HTAN data (what a field means, why a file seems missing, how an assay level is defined) can go to the support site too, or to the Data question issue form here. Questions about the HTAN portal, data submission or controlled access (dbGaP phs002371) belong with the HTAN Data Coordinating Center.

Bugs and feature requests go to the issue tracker. For a bug, include a minimal reproducible example, sessionInfo() and htan_snapshot_info(); the bug form asks for each.

Open-ended discussion (ideas, show and tell, analysis approaches) is welcome in GitHub Discussions.

Before asking, the documentation site has a getting-started guide and articles on the data model, the atlases and an analysis workflow.