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Retrieve a remotely read parquet file of Bioconductor build data

get_bbs_table.Rd

Bioconductor Build results are at times cumbersome to work with and interrogate. Parquet files of condensed reports are provided remotely. These functions read the remote parquet files using the arrow package and return a tibble. Once retrieved the table is stored in a custom environment for easy quick reference either to use ad hocly or within pre-defined queries provided by this package.

Usage

get_bbs_table(tblname = c("build_summary", "info", "propagation_status"))

Arguments

tblname

A valid parquet file name. Currently available: build_summary, info, or propagation_status.

Value

returns a tibble.

Details

The get_bbs_table returns a tibble but is also saved in a custom environment for quick easy subsequent reference. There are three tables available and can be specified in get_bbs_table: build_summary, info, or propagation_status. build_summary returns a tibble with the results of each stage of the Bioconductor build process. info returns a tibble with information regarding the package maintainer and git commit status. propagation_status returns a tibble with data on if a package propagated to the community.

See also

get_all_bbs_tables

Author

Lori Shepherd

Examples

info <- get_bbs_table("info")
#> Using cached table 'info'
info
#> # A tibble: 1,153,969 × 9
#>    Package Version Maintainer MaintainerEmail git_url git_branch git_last_commit
#>    <chr>   <chr>   <chr>      <chr>           <chr>   <chr>      <chr>          
#>  1 adduct… 1.26.0  Josie Hay… jlhayes1982 at… https:… RELEASE_3… 371b0e2        
#>  2 affyco… 1.48.0  Robert D … rshear at ds.d… https:… RELEASE_3… 45dff8f        
#>  3 affyda… 1.58.0  Robert D … rshear at ds.d… https:… RELEASE_3… 10b07a5        
#>  4 Affyhg… 1.46.0  Zhicheng … zji4 at jhu.edu https:… RELEASE_3… 3087443        
#>  5 Affyhg… 1.48.0  Zhicheng … zji4 at jhu.edu https:… RELEASE_3… 404c1b6        
#>  6 Affyhg… 1.44.0  Zhicheng … zji4 at jhu.edu https:… RELEASE_3… 2df08dd        
#>  7 Affyme… 0.48.0  Henrik Be… henrikb at bra… https:… RELEASE_3… d77ca79        
#>  8 Affymo… 1.48.0  Zhicheng … zji4 at jhu.edu https:… RELEASE_3… 53202e1        
#>  9 airway  1.30.0  Michael L… michaelisaiahl… https:… RELEASE_3… a6a39c3        
#> 10 ALL     1.52.0  Robert Ge… rgentlem at gm… https:… RELEASE_3… 0bc53bb        
#> # ℹ 1,153,959 more rows
#> # ℹ 2 more variables: git_last_commit_date <dttm>, report_md5 <chr>

library(dplyr)
# all the package Lori Shepherd maintains
info |> filter(Maintainer == "Lori Shepherd") |> distinct(Package)
#> # A tibble: 1 × 1
#>   Package      
#>   <chr>        
#> 1 BiocFileCache