SRA operations

swagger.SRA

Methods

experiment_by_accession_sra_experiments_accession_get Experiment By Accession experiments_for_sample_sra_samples_accession_experiments_get Experiments For Sample experiments_for_study_sra_studies_accession_experiments_get Experiments For Study experiments_sra_experiments_get Experiments mapping_sra_fields_entity_get Mapping run_by_accession_sra_runs_accession_get Run By Accession runs_for_experiment_sra_experiments_accession_runs_get Runs For Experiment runs_for_sample_sra_samples_accession_runs_get Runs For Sample runs_for_study_sra_studies_accession_runs_get Runs For Study runs_sra_runs_get Runs sample_by_accession_sra_samples_accession_get Sample By Accession samples_for_study_sra_studies_accession_samples_get Samples For Study samples_sra_samples_get Samples studies_sra_studies_get Studies study_by_accession_sra_studies_accession_get Study By Accession

Public fields

path

Stores url path of the request.

apiClient

Handles the client-server communication.

userAgent

Set the user agent of the request.

Active bindings

path

Stores url path of the request.

Methods

Public methods

Method new()

Usage

SRAApi$new(apiClient)

Method experiment_by_accession_sra_experiments_accession_get()

Usage

SRAApi$experiment_by_accession_sra_experiments_accession_get(
  accession,
  include_fields,
  exclude_fields,
  ...
)

Method experiments_for_sample_sra_samples_accession_experiments_get()

Usage

SRAApi$experiments_for_sample_sra_samples_accession_experiments_get(
  accession,
  include_fields,
  exclude_fields,
  size,
  cursor,
  ...
)

Method experiments_for_study_sra_studies_accession_experiments_get()

Usage

SRAApi$experiments_for_study_sra_studies_accession_experiments_get(
  accession,
  include_fields,
  exclude_fields,
  size,
  cursor,
  ...
)

Method experiments_sra_experiments_get()

Usage

SRAApi$experiments_sra_experiments_get(
  q,
  size,
  cursor,
  facet_size,
  include_fields,
  exclude_fields,
  facets,
  ...
)

Method mapping_sra_fields_entity_get()

Usage

SRAApi$mapping_sra_fields_entity_get(entity, ...)

Method run_by_accession_sra_runs_accession_get()

Usage

SRAApi$run_by_accession_sra_runs_accession_get(
  accession,
  include_fields,
  exclude_fields,
  ...
)

Method runs_for_experiment_sra_experiments_accession_runs_get()

Usage

SRAApi$runs_for_experiment_sra_experiments_accession_runs_get(
  accession,
  include_fields,
  exclude_fields,
  size,
  cursor,
  ...
)

Method runs_for_sample_sra_samples_accession_runs_get()

Usage

SRAApi$runs_for_sample_sra_samples_accession_runs_get(
  accession,
  include_fields,
  exclude_fields,
  size,
  cursor,
  ...
)

Method runs_for_study_sra_studies_accession_runs_get()

Usage

SRAApi$runs_for_study_sra_studies_accession_runs_get(
  accession,
  include_fields,
  exclude_fields,
  size,
  cursor,
  ...
)

Method runs_sra_runs_get()

Usage

SRAApi$runs_sra_runs_get(
  q,
  size,
  cursor,
  facet_size,
  include_fields,
  exclude_fields,
  facets,
  ...
)

Method sample_by_accession_sra_samples_accession_get()

Usage

SRAApi$sample_by_accession_sra_samples_accession_get(
  accession,
  include_fields,
  exclude_fields,
  ...
)

Method samples_for_study_sra_studies_accession_samples_get()

Usage

SRAApi$samples_for_study_sra_studies_accession_samples_get(
  accession,
  include_fields,
  exclude_fields,
  size,
  cursor,
  ...
)

Method samples_sra_samples_get()

Usage

SRAApi$samples_sra_samples_get(
  q,
  size,
  cursor,
  facet_size,
  include_fields,
  exclude_fields,
  facets,
  ...
)

Method studies_sra_studies_get()

Usage

SRAApi$studies_sra_studies_get(
  q,
  size,
  cursor,
  facet_size,
  include_fields,
  exclude_fields,
  facets,
  ...
)

Method study_by_accession_sra_studies_accession_get()

Usage

SRAApi$study_by_accession_sra_studies_accession_get(
  accession,
  include_fields,
  exclude_fields,
  ...
)

Method clone()

The objects of this class are cloneable with this method.

Usage

SRAApi$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.